Table 1.
General features of whole genomes of K. gyiorum (SWMUKG01), K. gyiorum (CG1), A. faecalis (ZD02), A. aquatilis (BU33N), A. xylosoxidans (NCTC10807), A. insolitus (FDAARGOS_88), B. bronchiseptica (253), B. pertussis (Tohama I) and B. parapertussis (Bpp5).
Fig 1.
Circular map of the complete genome of K. gyiorum SWMUKG01.
Circles from outside to inside: CDS on the forward strand (1) and CDS on the reverse strand (2), belonging to different COG categories were indicated by different colors; rRNA and tRNA genes (3); GC content (4); GC skew with + value (green) and–value (purple) (5).
Fig 2.
Phylogenetic trees of K. gyiorum SWMUKG01 and other closely related bacteria.
(A) The phylogenetic tree was constructed using FastTree based on the 16S rRNA gene sequences. (B) The phylogenetic tree was constructed using PGAP based on 880 randomly concatenated, core genes in the genomes of K. gyiorum SWMUKG01 and 15 other closely related bacteria.
Fig 3.
Venn diagram showing the gene conservation among the K. gyiorum SWMUKG01 and 15 other closely related bacteria.
The number in the center of Venn diagram indicates the number of genes shared by all bacteria.
Fig 4.
Structure and distribution of the flagellum biosynthetic region (PROKKA_00866–00919) in K. gyiorum SWMUKG01.
The box arrows represent ORFs.
Fig 5.
Comparison of the pilus structure in the genomes of K. gyiorum SWMUKG01, Aggregatibacter actinomycetemcomitans and Y. pestis.
The box arrows represent ORFs.
Table 2.
Genes encoding proteins with a role in adherence of strain SWMUKG01.
Table 3.
Genes encoding proteins with a role in lipopolysaccharide metabolism of strain SWMUKG01.
Table 4.
Genes encoding proteins with a role in capsule polysaccharide biosynthesis of strain SWMUKG01.
Table 5.
Genes encoding secretion systems in strain SWMUKG01.
Fig 6.
Structure and distribution of T4SS in K. gyiorum SWMUKG01 and other related bacteria.
The box arrows represent ORFs. Similar regions are indicated with the degree of nucleotide identity being shown in gray scales.
Table 6.
Genes encoding iron uptake systems in strain SWMUKG01.
Table 7.
Genes encoding two-component signal transduction systems in strain SWMUKG01.
Table 8.
Genes encoding multidrug efflux pumps in strain SWMUKG01.