Fig 1.
Flowchart describing the de novo genome assembly pipeline used in the present study.
Table 1.
Number of data records (n), mean values, standard deviations (SDs), minimum and maximum values and range (Max–Min), and median values of metamorphic traits in two experimental crosses.
Table 2.
Number of progeny assigned to each of the families generated in the factorial cross.
Table 3.
Heritabilities (bold, diagonal values with standard errors), genetic correlations (below diagonal values), and phenotypic correlations (above the diagonal) among metamorphic traits in captive-bred Japanese eel.
Table 4.
Number of SNP markers, genetic length for each linkage group.
Fig 2.
The consensus linkage map of Japanese eel.
Fig 3.
Comparisons of the recombination rates of shared markers in each linkage group between the consensus and sex-specific maps of Japanese eels.
Fig 4.
Simple interval mapping of QTLs for metamorphic traits in Japanese eels.
Table 5.
Summary of the assembly statistics of Japanese eels.
Fig 5.
Pseudochromosome 1 of the Japanese eel genome, reconstructed from three input maps by ALLMAPS.
“Female-1” and “Male-1” indicate the LG1 from the female and male genetic linkage maps published by Kai et al. (2014). “Keyseq-1” indicates the LG1 of the consensus genetic linkage map developed in the present study.