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Fig 1.

A schematic diagram of the integrated ecosystem modelling and strategic management evaluation framework.

The diagram illustrates the current linking within the integrated modelling framework for investigating ecosystem-wide effects of human-induced pressures in the Baltic Sea.

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Fig 2.

Baltic Atlantis spatial polygon structure.

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Fig 3.

Baltic Atlantis model–biological structure.

Detail list of species included in each group is found in Table G in S1 File. The figure illustrates the main interactions focused upon in the current context, i.e. a comprehensive diagram of the full biological interactions between functional groups in the Baltic Atlantis model will be way too complex to overview in one diagram.

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Table 1.

Summary of biological structure of the Baltic ATLANTIS model.

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Table 2.

Relative (%) reduction of total nitrogen river load applied to certain Baltic Atlantis polygon according to the four nutrient load scenarios (#2–#5) and the changes in fishing mortality for the five fishing mortality scenarios (#6–#10).

Scenario 1 is the baseline to compare the results against.

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Fig 4.

Spatial distribution of annual average surface Chl-a [mg m-3].

As simulated by HBM-ERGOM for the annual average over the period 2005–2014 (A-B) and Baltic Atlantis for the annual average for the last five projection years (C). Areas marked in yellow represent concentrations of 5 mg m-3 or higher.

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Fig 5.

Time series evolution of Baltic Atlantis functional groups.

Total biomass in metric tons of biological functional groups and total DIN (dissolved inorganic nitrogen) obtained from a 60-year reference run initialized with 2005 data.

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Fig 6.

Emergent diet composition of sprat, cod, and seals from the whole of the Baltic Sea.

Results are average from last 5 years of model 60-year calibration run for both juvenile and adult groups, with the prey being arranged on the x-axis according to the trophic level (A, C, E) and the dynamics of the diet composition simulated over the 60 years–combined for adults and juveniles (B, D, F).

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Fig 7.

Biomass, condition and demography of Baltic cod and sprat, taken as an annual average from last 5 years of calibration run for the whole Baltic Sea.

The individual and population metrics per age class include: (A, C) biomass for 3 age groups over the 60 year simulation period (B, D) number of individuals.

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Fig 8.

Spatial distribution of Baltic sprat biomass for the 60 year simulation period.

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Fig 9.

Spatial distribution of bottom oxygen concentration for the Baltic Sea for the 60 year simulation period.

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Fig 10.

Results of the four river load scenarios.

Percentage of change of the biomass for the different biological functional groups compared to the status-quo scenario #1.

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Table 3.

Relative changes (%) of equilibrium fish and Nephrops total stock biomasses (TSB), averaged over the final simulation year, given the three nutrient load reduction scenarios (#2–#4) evaluated economically relative to the status-quo scenario (#1), of the species groups included in the Baltic Atlantis model.

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Fig 11.

Oxygen concentration of bottom layer: Baseline (scenario #1) vs. scenario #5.

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Fig 12.

Results of the five fishing mortality sensitivity analyses (scenario #6–#10 respectively).

Percentage of change of the biomass for the different biological functional groups compared to the status-quo scenario #1.

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Table 4.

NPV (mill EUR) from 2012 to 2037 for the four fleet segments for the baseline (scenario #1) and the three nutrient scenarios evaluated by FISHRENT (#2–#4).

Results based on original 2012 local ICES-based assessed fishing mortality (F) and total stock biomass (TSB) for the groups and areas listed in Table 3, compared to using Atlantis-based F and TSB.

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