Fig 1.
Distribution of SLAF tags and SNPs on chromosomes of 419 rice landraces.
(a) SLAF tags on chromosomes; (b) SNPs on chromosomes.
Fig 2.
Phylogenetic tree and PCA analysis for 419 rice landraces.
(a) Clustering of 419 rice landraces; (b) PCA analysis of 419 rice landraces.
Fig 3.
Population structure of all 419 rice landraces.
Fig 4.
Genome-wide association studies for gelatinization temperature based on MLM model.
(a-c) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels in 2014; (d-f) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels in 2015.
Fig 5.
Genome-wide association studies for gel consistency based on MLM model.
(a-c) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels in 2014; (d-f) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels in 2015.
Fig 6.
Genome-wide association studies for pericarp color based on MLM model.
(a-c) Manhattan plots and quantile-quantile plots for the whole panel and the two subpanels.
Table 1.
A sbuset of associated loci and candidate genes.