Table 1.
Summary of sequencing and mapping statistics.
Fig 1.
Pie chart of all types of SVs.
Each slice of the pie represented one type of SV.
Table 2.
N: number of SV. L: SV length (bp).
Fig 2.
SV distribution on chromosomes.
(A) Chromosomal distribution of SVs. (B) The chromosomal length of pig reference genome based on Sscrofa11.1.
Fig 3.
The percentage distribution of each SV type on chromosomes.
Table 3.
Number of SV detected in different pig breeds.
Fig 4.
Venn diagram showing the overlap of identified SVs.
(A) Venn diagram showing the overlap of identified SVs in the GZP, NPOG, and EUP breed. (B) Venn diagram showing the overlap of identified SVs in five GZP.
Fig 5.
The chromosome distribution of the breed-specific in GZP, NOPG, and EUP pig breed.
The vertical bars indicated different pig breed with the red, green and blue color for EUP, GZP and NPOG, respectively.
Fig 6.
Principal component analyses for all of 16 pig breeds.
Fig 7.
Summary of functional classification of SVs identified.
Fig 8.
The pattern of transcripts counts changed with the SV numbers.
The largest bubble showed the SV with most transcripts counts.
Table 4.
Genes affected by GZP-specific SVs enriched in GO terms and KEGG pathway related with fertility of GZP pig.
Fig 9.
Results of Genetic population analysis.
(A) Allele D frequency in pigs. (B) Allele I frequency in pigs. (C) The distribution frequencies of the six genes in 284 pigs.