Table 1.
Recorded traits with their abbreviations.
Fig 1.
Box-plots of the two treatments for the nine growth traits.
CTRL: control treatment; SALT: salt treatment; TIL: number of tillers; LL: maximum leaf length; RL: maximum root length, ROOT: root biomass; SHOOT: shoot biomass; R/S: root-to-shoot ratio; LA: leaf area; and SLA: specific leaf area.
Fig 2.
Distribution of the Na/K ratio among the tested accessions.
In orange, tolerant checks; in green, susceptible checks; and in blue, temperate japonica accessions.
Table 2.
Probabilities of the effects tested by ANOVA for the different traits.
Table 3.
Statistical parameters for all traits in the control (CTRL) and salinity (SALT) treatments and for the indices of stress response.
Table 4.
Broad-sense heritabilities for the different traits in the different treatments.
Table 5.
Significant markers in the GWAS using the classical method.
Table 6.
Significant markers in the GWAS using the interaction method.
Fig 3.
Manhattan plots for Na, K and Na/K using the classical GWAS method.
Fig 4.
Manhattan plots for the six traits analyzed with the interaction method for which significant associations were detected.
Fig 5.
Map of the detected associations compared to the positions of genes involved in salinity tolerance in rice.
Chromosomes 1 to 6.
Fig 6.
Map of the detected associations compared to the positions of genes involved in salinity tolerance in rice.
Chromosomes 7 to 12.
Table 7.
List of salt tolerance genes located less than 100 kb from the significant markers.