Table 1.
Sample populations, source project and sample utility in the project.
Table 2.
Observed heterozygosity (Mean ± SD) in various pig groups evaluated.
Fig 1.
PCA plot for pigs indicating their distribution along the first two eigenvectors.
Fig 2.
PCA plot for pigs indicating their distribution along the first and third eigenvectors.
Fig 3.
Admixture plot representing estimated membership coefficients for individual pigs for ancestral populations (K) ranging between 2 to 9.
Fig 4.
Cross validation plot indicating the model suitability as the number of putative populations (K) increases.
Table 3.
Minimum, maximum and average (least squares means with associated standard errors) ancestry composition for domestic pigs in Busia evaluated for ASFv (N = 117).
Table 4.
The number of pigs that tested ASFv positive and negative given their local pig ancestry proportions.
Fig 5.
Plots of selective sweep patterns for various pig populations.
The -log10(FDR-adjusted P) values are plotted against chromosome number. The dashed lines indicate the significance threshold for the top 1% SNPs based on with |iHS| value. Selective sweeps (iHS) for (5A) Bush pigs, (5B) Homabay, (5C) for Busia population and warthogs.
Table 5.
Genes located in regions under high differential selection and shared between Busia, Homabay and wild African pig populations.