Fig 1.
A pictorial overview of the methodologies used for sequencing and analysis of A. assamensis mitogenome.
Table 1.
List of species considered for comparative mitogenome study.
(Highlighted ones are the organisms of Bombycoidea superfamily used for comparative mitogenome analysis with respect to A. assamensis).
Fig 2.
A. assamensis mitochondrial genome.
(A) Circular map (B) Characteristic features of the mitogenome. tRNAs are represented as trn followed by the IUPAC-IUB single letter amino acid codes e.g. trnM denote tRNAMet. IGN represents (+) values as intergenic nucleotides and (-) values as overlapping regions.
Fig 3.
Mitogenome arrangement of A. assamensis with respect to other selected species.
Ancestor here denotes Thitarodes renzhiensis.
Fig 4.
Evolutionary rates (Ka/Ks) of individual PCG of A. assamensis with selected species.
w.r.t. here denotes with reference to-.
Fig 5.
Multiple sequence alignment of control region of A. assamensis mitogenome showing conserved structural elements.
Yellow and green highlighted blocks represent 1st and 2nd conserved blocks, respectively.
Fig 6.
Codon usage in A. assamensis mitogenome.
(A) Codon distribution where CDspT = codons per thousand codons (B) Relative synonymous codon usage (RSCU). Termination codons were excluded in the study.
Fig 7.
Phylogenetic tree inferred from nucleotide sequences of 13 PCGs of 34 organisms using maximum likelihood (ML) method in RaxmlGUI v1.3 (1000 bootstrap replicates).
The tree is drawn to scale with bootstrap values indicated along with the branches.
Fig 8.
Phylogenetic tree inferred from nucleotide sequences of 13 PCGs of 34 organisms using bayesian inference (BI) method in MrBayes v3.2.6.
The tree is drawn to scale with bayesian posterior probability values indicated along with the branches.