Fig 1.
Output results from the runtsir function for London.
Subplots A) and B) are the cumulative births against cumulative cases regression and estimated reporting rate, the C) and D) are the profiled from Zt and then reconstructed S, E) is 26-point βt with the α and mean β (indicated as
) estimate, and F) and G) are the data (blue) against 10 randomly chosen stochastic simulations (red) and the (inverse) data against mean of the simulations with confidence intervals.
Fig 2.
Dashed lines are the time points in which the forward simulation resets in the epidemics = ‘break’ argument for a threshold for three.
Fig 3.
The forward simulations for the Northwich time-series data under an epidemic-ahead fit using a threshold of three.
The color coding in the panels shown here are the same as in Fig 1.
Table 1.
Summary and description of the main functions in the tsiR package.