Table 1.
List of taxa sampled in this study, with the voucher, chloroplast genome size, Illumina reads and coverage depth information.
Fig 1.
Gene map of Schima superba chloroplast genome.
Fig 2.
Comparisons of the border regions among the chloroplast genomes of 11 Schima species.
ycf1* (ycf1_like) and rps19* (rps19_like) represent the incomplete duplication of the gene within the IR region.
Fig 3.
mVISTA percent identity plot comparison among the chloroplast genomes with S. sinensis as a reference.
Fig 4.
Percentage of variation in 79 variable noncoding regions of the 11 Schima chloroplast genomes.
These regions are oriented according to their locations in the genome.
Table 2.
Sequence divergence of 49 variable coding regions (>150 bp) from 11 chloroplast genomes of Schima, with one of the Inverted Repeat regions removed.
Table 3.
Sequence divergence of 79 variable noncoding loci (>150 bp) from 11 chloroplast genomes of Schima, with one of the invert repeat regions removed.
Table 4.
Location of SSR loci within the 11 Schima genomes.
Fig 5.
Phylogenetic relationships among the 11 Schima species.
The phylogenetic tree was reconstructed using the whole chloroplast genome data set minus a copy of the IR region. Numbers above the branches show bootstrap support values that are above 80%.