Fig 1.
Flow diagram for the SNP selection steps with major criteria.
Fig 2.
Distribution of the p-convert values for candidate and on-chip probes.
Table 1.
The counts of the SNPs clustering categories.
Fig 3.
Distribution of the interval spacing of the SNPs on the array.
Table 2.
The counts of the SNPs types.
Table 3.
Summary of the SNPs according to their positions or functions.
Fig 4.
Distribution of the concordance rate of the SNPs on the array.
Table 4.
Estimation of genotyping accuracy by family data.
Fig 5.
Principal component analysis of all samples.
The first principal component (PC1) was assigned to X axis, and the second principal component (PC2) was assigned to Y axis. “China-North”, “China-South”, “Japan”, “Korea”, and “Canada” represented the Pacific oysters collected in northern China, southern China, Japan, Korea, and Canada, respectively. “Family” represented the parents and 24 off-springs of a full-sib family. The parents of the full-sib family were also collected in northern China.