Fig 1.
Genotype natures of the 11 gene segments of 12 Thai DS-1-like intergenogroup reassortant strains having G8P[8] genotypes, KKL-17, PCB-79, PCB-84, PCB-85, PCB-103, SKT-107, SWL-12, NP-130, PCB-656, SKT-457, SSKT-269, and SSL-55, compared with those of selected human and animal strains.
The 12 study strains are shown in red, while other DS-1-like intergenogroup reassortant strains are shown in blue. Asterisks indicate co-circulating strains, PCB-180, SKT-98, BD-20, NP-M51, SKT-138, SSKT-133, LS-202, and LS-L7, reported in this and the preceding studies [19]. Gray shading indicates the gene segments with genotypes identical to those of the 12 strains. “−” indicates that no sequence data were available in the DDBJ and EMBL/GenBank data libraries. aThe gene segments that are most similar to those of strain KKL-17. bThe gene segments that are most similar to those of strain PCB-79. cThe gene segments that are most similar to those of strain PCB-84. dThe gene segments that are most similar to those of strain PCB-85. eThe gene segments that are most similar to those of strain PCB-103. fThe gene segments that are most similar to those of strain SKT-107. gThe gene segments that are most similar to those of strain SWL-12. hThe gene segments that are most similar to those of strain NP-130. iThe gene segments that are most similar to those of strain PCB-656. jThe gene segments that are most similar to those of strain SKT-457. kThe gene segments that are most similar to those of strain SSKT-269. lThe gene segments that are most similar to those of strain SSL-55.
Fig 2.
Phylogenetic tree constructed from the nucleotide sequences of the G8-VP7 genes of the study strains and representative RVA strains.
In the tree, the positions of the 12 Thai DS-1-like G8P[8] strains are shown in red, while those of other DS-1-like intergenogroup reassortant strains are shown in blue. Asterisks indicate co-circulating strains, PCB-180, SKT-98, BD-20, NP-M51, SKT-138, SSKT-133, LS-202, and LS-07. Bootstrap values of <75% are not shown. Scale bar: 0.05 substitutions per nucleotide.
Fig 3.
Phylogenetic tree constructed from the nucleotide sequences of the G2-VP7 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.05 substitutions per nucleotide.
Fig 4.
Phylogenetic tree constructed from the nucleotide sequences of the P[8]-VP4 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.
Fig 5.
Phylogenetic tree constructed from the nucleotide sequences of the P[4]-VP4 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.
Fig 6.
Phylogenetic tree constructed from the nucleotide sequences of the I2-VP6 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.05 substitutions per nucleotide.
Fig 7.
Phylogenetic tree constructed from the nucleotide sequences of the R2-VP1 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.05 substitutions per nucleotide.
Fig 8.
Phylogenetic tree constructed from the nucleotide sequences of the C2-VP2 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.
Fig 9.
Phylogenetic tree constructed from the nucleotide sequences of the M2-VP3 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.05 substitutions per nucleotide.
Fig 10.
Phylogenetic tree constructed from the nucleotide sequences of the A2-NSP1 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.05 substitutions per nucleotide.
Fig 11.
Phylogenetic tree constructed from the nucleotide sequences of the N2-NSP2 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.
Fig 12.
Phylogenetic tree constructed from the nucleotide sequences of the T2-NSP3 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.
Fig 13.
Phylogenetic tree constructed from the nucleotide sequences of the E2-NSP4 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.
Fig 14.
Phylogenetic tree constructed from the nucleotide sequences of the H2-NSP5 genes of the study strains and representative RVA strains.
See legend to Fig 2. Scale bar: 0.02 substitutions per nucleotide.