Table 1.
B73 RNA-seq data sets sources.
Fig 1.
Phylogenetic tree of 27 data sets.
(A) Distance-scaled branch lengths; (B) Unscaled tree. Only bootstrap values greater than or equal to 60 are displayed.
Fig 2.
SNP distribution pattern for each of the 27 samples on each of the first 6 chromosomes of maize.
Non-reference-like homozygous genotypes are indicated in blue and heterozygous genotypes in red. The sample order from top to bottom on Y-axis in each sub-figure is the same order displayed as in Fig 1B.
Fig 3.
Zoom in on haplotype regions c2r1, c2r2 and c5r2.
(A) Haplotype region c2r1 on Chromosome 2; (B) Haplotype region c2r2 on Chromosome 2; (C) Haplotype region c5r2 on Chromosome 5. Non-reference-like homozygous genotypes are indicated in blue and heterozygous genotypes in red. Named haplotype regions are those between the green bars.
Fig 4.
Relationship of the China B73 version of haplotype region c2r1 to the maize HapMap2 varieties.
Table 2.
Relationship of Non-Reference-Genome Like SNP Blocks to Haplotypes Surveyed by HapMap2.