Table 1.
Statistics describing the distribution of different properties of each sequenced individual.
Table 2.
Summary statistics of different properties of assembling into reference sequences.
Fig 1.
Transitions and transversions occurring within a set of filtered SNPs.
Table 3.
Counts of putative loci after different filtering steps.
Fig 2.
Graphical representation of outlier tests results.
(A) results from the LOSITAN. Above the top line is a 0.995 probability for being candidates of selection. A subset of the loci between the two lines is within 0.005–0.995 probability and is considered neutral. The remaining SNPs are conservatively considered undetermined. (B) results from BAYESCAN. The vertical line represents a false discovery threshold of 0.05. The candidate loci under directional selection are on the right side of the vertical line.
Fig 3.
Admixture analysis of L. maculatus based on all, neutral and outlier SNPs.
Each vertical line represents one individual, partitioned into segments according to admixture proportion of the spotted sea bass sampled from Dandong (green) and Beihai (red).
Fig 4.
The genetic relationships among individuals of Beihai and Dandong illustrated by the NetView P analysis.
Table 4.
Results of leave-one-out tests for individual assignment with four SNP panels.
Fig 5.
Gene ontology assignment plot.
The plot shows GO of candidate genes for adaptive differentiation.
Table 5.
Characterization of 22 GO annotations obtained from Blast2Go analysis.