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Fig 1.

Overview of work.

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Table 1.

Annotated NE types.

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Table 2.

Annotated event types.

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Fig 2.

Examples of annotated Affect events.

Event triggers are shown in blue and entity annotations are shown in green. Event participants are linked to the corresponding event trigger with arrows. The labels on the arrows represent the semantic label assigned to the participant.

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Fig 3.

Examples of annotated Causality events.

Event triggers are shown in blue and entity annotations are shown in green. Event participants are linked to the corresponding event trigger with arrows. The labels on the arrows represent the semantic label assigned to the participant.

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Table 3.

MetaMap to HIMERA category mappings.

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Table 4.

Entity annotation agreement rates.

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Table 5.

Annotated Entity counts in HIMERA.

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Table 6.

5-fold cross-validation NE results.

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Table 7.

Temporal-based model results.

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Table 8.

Event trigger recognition results.

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Fig 4.

DSM precision for diseases in BMJ.

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Fig 5.

DSM recall for diseases in BMJ.

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Fig 6.

DSM precision for diseases in MOH.

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Fig 7.

DSM recall for diseases in MOH.

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Table 9.

Expert semantic categorisation of DSM output.

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Fig 8.

Term-based search in HOM.

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Fig 9.

Individual document display in HOM.

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