Table 1.
Results from reproducing Table 2 of the original paper, where the original results are shown in between parenthesis.
Table 2.
Predictor and response variables for the SOAPdenovo2 study, as identified in the ISA-TAB documents.
Fig 1.
A graphical representation showing the role of ISA, Nanopublication and Research model in progressively structuring experimental information, moving from hand written notes in laboratory books to semi-structure tab-delimited files and fully explicit linked data.
Fig 2.
Another view of the complementary aspects of these research object models, highlighting the reliance of persistent identifiers (such as ORCID), and references to Galaxy workflows hosted on GigaScience Servers.
Fig 3.
A detailed view showing how linked data representation of an ISA experiment (upper pane, in green background), with one of the finding expressed as Nanopublication statements, (lower pane), where a red outline indicates the key statement.