Table 1.
Comparison between ALDB and related databases.
Fig 1.
Identification of lincRNAs and calculation of expression levels.
(A) Computational pipeline to identifying lincRNAs. (B) Pipeline of calculation of expression levels for protein-coding and lncRNA genes. Blue box: input data. Green box: processing. Orange box: outcomes.
Table 2.
Description of MySQL database tables.
Fig 2.
Schematic illustration of ALDB sitemap.
Blue box: navigation bar. Green box: processing. Orange box: outcomes.
Fig 3.
Visualization of genome annotation using GBrowse.
(A) Users can search and browse features using GBrowse. (B) Detail page of a gene. (C) Tracks in GBrowse.
Fig 4.
Screenshot of the search pages.
(A) Search for transcripts or genes by their ids or names. (B) Basic information for a gene. (C) Basic information for a transcript. (D) The expression levels of genes in various tissue samples. (E) About ten genes adjacent to the current gene are represented. (F) The QTLs which overlap with the current gene or transcript. (G) Search for transcripts or genes by genomic region. (H) Search for neighboring lncRNAs of protein-coding genes.
Fig 5.
Screenshot of the BLAST and download pages.
(A) The BLAST page. (B) The download page.