Fig 1.
Phylogenetic analysis of the NDST protein family.
Based on sequence similarity and phylogenetic analysis, the NDST enzymes can be divided into three main branches: NDST1, NDST2 and a common branch for NDST3 and NDST4. Invertebrate genomes contain a single ndst. The consensus neighbor-joining tree was calculated with 1000 bootstrap replicates. Zebrafish Ndst enzymes are encircled. Species names are abbreviated as follows: hs, human; mm, mouse; gg, chicken; ga, stickleback; lc, coelacanth; dr, zebrafish; ci, sea squirt; dm, fruit fly; ce, C. elegans; nv, starlet sea anemone; ta, Trichoplax. The accession numbers are listed under Experimental procedures.
Fig 2.
Schematic presentation of chromosomal or scaffold position of NDST3, NDST4, UGT8 and PRSS12 in different vertebrate species.
Arrowed rounded rectangles display the orientation of the genes. Numbers between the genes indicate the distances in kilo base pairs. Gene name abbreviations: UGT8 (ceramide UDP-galactosyltransferase), PRSS12 (neurotrypsin).
Table 1.
Expression of ndst genes in zebrafish embryos during early development.
Fig 3.
Expression of zebrafish ndst genes at early developmental stages.
Lateral view of embryos at 2 cell, 5 somite and lateral and dorsal view of embryo head (D, L, P, T) or tail at 15 somite stage, respectively. Expression of ndst1a: A-D; ndst1b: E-H; ndst2a: I-L; ndst2b: M-P; ndst3: Q-T. Areas of the developing eye are marked with dotted lines. Abbreviations used: e, eye; f, forebrain; h, hindbrain; m, midbrain; nc, neural crest; s, somites; t, tectum.
Fig 4.
Expression of zebrafish ndst genes at 24, 38 and 50 hpf.
Lateral and dorsal view of the embryos, or head region of the embryo. Embryonic expression patterns are shown for ndst1a: A-E; ndst1b: F-J; ndst2a: K-O; ndst2b: P-T; ndst3: U-Y. Abbreviations used: h, hindbrain; icm, intermediate cell mass (blood islands); op, olfactory placode and olfactory bulb; r, rhombomeres; s:, somites; sc, spinal cord; t, tectum; te, telencephalon.
Fig 5.
Expression of zebrafish ndst genes at 72 hpf.
Lateral views of larvae (first column to the left), dorsal views of larval heads (second column to the left) and transversal sections showing the expression patterns of ndst1a: A-D; ndst1b: E-H; ndst2a: I-L; ndst2b: N-Q; and ndst3: R-U. Positions of the sections are indicated with arrow heads. Abbreviations used: h, hindbrain; pf, pectoral fins.
Fig 6.
Morpholino knockdown of zebrafish ndst1b results in craniofacial cartilage defects at the early stages of development (3–7 dpf).
Lateral and ventral view of a zebrafish larvae at 3 dpf injected with either control MO mix (A-B), MO1 (D-E) or MO2 (G-H) in combination with p53 MO (see Experimental Procedures). The black arrows point at the underdeveloped craniofacial cartilage of ndst1b morphants, while the red arrow heads point at the pectoral fins of the morphants, shortened in comparison to fins of the control larvae. At 5 dpf, the effects of the ndst1b MOs on zebrafish larvae were still visible. ndst1b MO treated larvae had shortened pectoral fins and body axis, smaller head and eyes, underdeveloped craniofacial cartilage and no swimming bladder (C,F,I). Confocal microscope images present a ventral view of Tg(fli1:EGFP) zebrafish larvae. GFP is expressed in endothelial and neural crest derived cells. Morphants displayed severe malformations in the pharyngeal cartilage structures (K, L) in comparison to control larvae (J). In contrast, chondrocyte stacking and flattening does not appear to be strongly affected, as compared to extl3-/- and ext2-/- mutant embryos (M-N) with clear chondrocyte stacking defects. The second pharyngeal arch (the ceratohyal), incorrectly localized in the ndst1b morphants, is indicated with a white arrow head (J-L). The incorrect localization is also seen after alcian blue staining of 7 dpf larvae injected with MO1, MO2 and half working dosage of these two combined (1/2 X (MO1 + MO2); O-R). Panel S of the figure represents quantification in percentage of the ceratohyal phenotype at day 6 of the development in phenotypic classes observed (chi-square test: *** p<0.001 comparing affected and nonaffected embryos). Confocal microscope images of the Tg(1.7col2a1a:mEGFP) fish (1–3) show the difference between reverted (1), perpendicular (2) and non-affected ceratohyals.