Table 1.
Estimation of gene diversity, heterozygosity, PIC and major allele frequency in NE Indian rice collection (6984)
Table 2.
State-wise Analysis of Molecular Variance (AMOVA) of NE Indian rice collections.
Table 3.
State-wise Principal Coordinate Analyses of NE Indian rice collections, with percentage of variation explained by the first 3 axes.
Table 4.
A comparison of percent of alleles generated in total collection vs core set.
Figure 1.
Phylogenetic tree of NE India rice core set (701 accessions) constructed based on SNP data.
Germplasm accessions collected from the NE states are depicted with different colours Arunachal Pradesh - green, Assam - red, Manipur - purple, Meghalaya - black, Mizoram -yellow, Nagaland - light blue, Tripura - dark blue.
Table 5.
Estimation of gene diversity, heterozygosity, PIC and major allele frequency in NE India rice core set (701 accessions).
Figure 2.
Estimation of populations in NE India rice core set using LnP(D) derived Δk for k from 1 to 20.
Figure 3.
Model based clustering of the NE India rice core set (701 accessions).
Figure 4.
Analysis of Molecular Variance (AMOVA) analyses of NE India rice core set.
Figure 5.
Principal Coordinate Analysis (PCoA) analyses of NE India rice core set.
Figure 6.
Comparison of allele frequency occurrence in total NE rice collections vs core set identified in the present study.
Table 6.
AMOVA of core set of NE Indian rice (701 accessions).
Table 7.
Percentage of variation explained by the first 3 axes in Principal Coordinate Analyses of NE Indian rice core set (701 accessions).