Table 1.
GenBank/EMBL/DDBJ accession numbers of 16S rDNA, gyrB, rpoD and whole genome sequences for strains R9SW1T, A3d10T and phylogenetically related type strains and type species of the genus Marinobacter.
Table 2.
Differential characteristics between strains R9SW1T, A3d10T, their close phylogenetic neighbors and type species of the genus Marinobacter.
Figure 1.
Neighbour-joining phylogenetic tree showing the taxonomic position of strains R9SW1T and A3d10T according to their (A) 16S rRNA, (B) gyrB and (C) rpoD gene sequences.
Numbers at branching points are percentage bootstrap values based on 1000 replications, with only values above 50% are shown. Scale bar represents 0.005/0.02 substitutions per nucleotide position. The Maximum-likelihood (ML) and maximum Parsimony (MP) algorithms were also used for tree construction, where branches in agreement with ML and MP methods were marked with + and X respectively.
Table 3.
The gyrB and rpoD gene sequence similarities of strains R9SW1T, A3d10T and phylogenetically related type strains and type species of the genus Marinobacter.
Figure 2.
Main spectra library (MSP) dendrogram of MALDI-TOF mass spectral profiles of strains R9SW1T, A3d10T and closely related Marinobacter species.
The dendrogram was generated by MALDI Biotyper 3.0 software with distance is displayed in relative units.
Figure 3.
Phylogenomic tree of strains R9SW1T, A3d10T, M. hydrocarbonoclasticus ATCC 49840T and M. adhaerens HP15T constructed using concatenated sequence of the core proteome (544,643 bp) of the genomes.
Alteromonas sp. DE was used as outgroup.
Table 4.
The genomic signatures between strains R9SW1T, A3d10T, M. adhaerens HP15T and M. hydrocarbonoclasticus ATCC 49840T.
Table 5.
Comparative identification of phenotypic characteristics based on genomic analysis and physiological and biochemical tests.