Table 1.
Viruses detected from garlic (Allium sativum) and wild garlic (A. vineale) plants.
Figure 1.
Maximum likelihood phylogenetic tree of amino acid sequences of coat proteins of isolates of the carlaviruses garlic common latent virus (GCLV) (red dots) and shallot latent virus (SLV) (black dots).
Shown for each isolate is GenBank accession code, isolate name and country of origin. Isolates described in this study are indicated by a dot.
Figure 2.
Maximum likelihood phylogenetic tree of amino acid sequences of the region of the polyprotein from the beginning of the 6K2 cistron through to the end of the coat protein of isolates of the potyviruses leek yellow stripe virus (LYSV) (black dots) and onion yellow dwarf virus (OYDV) (red dots).
Shown for each isolate is GenBank accession code, isolate name and country of origin. Isolates described in this study are indicated by a dot.
Figure 3.
Maximum likelihood phylogenetic tree of amino acid sequences of coat proteins of isolates of allexiviruses.
Virus sequences analysed were garlic virus A (GarVA) (red dots), garlic virus B (GarVB) (dark green dot), garlic virus C (GarVC) (brown dots), garlic virus D (GarVD) (light green dots), garlic virus E (GarVE) and garlic virus X (GarVX) (black dots). The CP of blackberry virus E (BVE) (Family Alphaflexiviridae) was used as the outgroup. Shown for each isolate is GenBank accession code, isolate name and country of origin. Isolates described in this study are indicated by a dot.
Figure 4.
Maximum likelihood phylogenetic tree of amino acid sequences of replicase proteins of isolates of potexviruses.
Shown for each isolate is GenBank accession code, and virus name. The sequence representing the new Asparagus virus 3 (AV3) isolate is indicated by a black dot. The homologous region of an isolate of garlic virus A (Allexivirus) was used as the outgroup.
Table 2.
Comparison of genomes of three isolates of Asparagus virus 3 (AV3) (syn scallion virus X, ScaVX): AV3-Japan, ScaVX-China and AV3-SW12.