Figure 1.
Circular map of the mitogenome of B. minax.
The genes located outside adjoined the bold line circle (J-strand) indicated that the direction of transcription is opposite to the genes located inside adjoined the bold line circle (N-strand). B. minax complete mitogenome was jointed using 21 (F1–F21) fragments shown as single lines within the bold line circle.
Table 1.
Summary of primers used for complete mtgenome of B. minax amplification.
Table 2.
Summary of B. minax mitogenome.
Table 3.
Length and base composition of different genomic regions in 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
Table 4.
Relative synonymous codon usage of 10 tephritid species, 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
Figure 2.
The AT content percentage of 0-fold degenerate sites, 2-fold degenerate sites and 4-fold degenerate sites in each protein-coding gene of mitochondrial genomes of 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
The black line with short line on the top of each bar represents the standard deviation value (SD).
Figure 3.
The nucleotide substitution frequency at 0-fold degenerate sites, 2-fold degenerate sites and 4-fold degenerate sites in each protein-coding gene of mitochondrial genomes of 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
Table 5.
A+T content percentage and nucleotide substitution frequency at 0-fold degenerate sites (P0FD), 2-fold degenerate sites (P2FD) and 4-fold degenerate sites (P4FD) (the number of substitutions per P0FD, P2FD and P4FD site)in each PCG of mtgenome of 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
Table 6.
The A+T content percentage of 0-fold degenerate sites (AT0F), the nucleotide substitution number of 0-fold degenerate sites/the nucleotide substitution number of all degenerate sites (R0F/all) and the mean genetic distance based on amino acid sequence (ASD) in each protein-coding gene of mitochondrial genomes of 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae, and the correlation coefficient between them (AT0F, R0F/all and ASD).
Figure 4.
Predicated secondary clover-leaf structures for the 22 tRNA genes of B. minax.
The tRNAs are labled with abbreviation of their corresponding amino acids below each tRNA gene structure. Arms of tRNAs (clockwise from top) are the amino acid acceptor arm, TΨC arm, the anticodon arm, and dihydrouridine (DHU) arm. (A) J-strand coding tRNAs. (B) N-strand coding tRNAs.
Table 7.
Locations, length and sequences of four shorter intergenic spacers in 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
Figure 5.
Alignment of the poly-thymidine stretch at the 5′ end of the control region described by Zhang et al. (1997) among 10 tephritid species, B. oleae, B. tryoni, B. philippinensis, B. carambolae, B. papaya, B. dorsalis, C. capitata, B. minax, B. correcta and B. curcubitae.
The poly-T stretch runs from nucleotide positions from 15974 to 15997 with respect to the B. minax mitogenome in the direction of 5′-3′.