Figure 1.
Subsystem category distribution statistics for the genome of E. Anophelis as annotated by RAST.
The pie chart represents relative abundance of each subsystem category and numbers depict subsystem feature counts.
Table 1.
The similarity of comparable CDS between R26T and related genomes in the family Flavobacteriaceae.
Figure 2.
Graphic view of a syntenic gene cluster that is conserved in five taxa of Bacteroidetes.
The genes encoding the components of TonB dependent transporters are ExbB, ExbD and TonB. Locus ID of each gene is given in the boxes, with taxon prefix (e.g. D505_ for E.a.) in the ExbB box for each species. The box with * in D. fermentans represents a predicted gene encoding a hypothetic protein. The scale bar represents 1 kb in length. Phylogenetically, E. anophelis and F. johnsoniae belong to the class Flavobacteria, Dyadobacter fermentans belongs to the class Cytophagia, Arcticibacter svalbardensis is in the class Sphingobacteriia, and Bacteroides thetaiotaomicron is located in the class Bacteroidia.
Figure 3.
Graphic view of four Sus-like loci in the genome of E. anophelis R26T.
Locus ID of each gene is given in the boxes. HP: hypothetic protein. The scale bar represents 1 kb in length.
Figure 4.
Graphic view of a locus where three component genes of an RND efflux pump are located syntenically in four taxa of Bacteroidetes.
Gene name was given on the top of each box. Locus ID of each gene is given in the boxes. OMP, outer membrane protein; RND: HAE1, Hydrophobe/amphiphile efflux-1; MFP, membrane fusion protein; HP: hypothetic protein. The scale bar represents 1 kb in length.
Table 2.
Summary of the functional subcategories of resistance genes.
Figure 5.
Phylogenetic relationship of homologues of three selected lactam degrading enzymes in E. anophelis and other taxa.
(A) D505_10647; (B) D505_08675; (C) D505_08350. Numbers above clades are bootstrap values (1,000 replicates). The trees were constructed by Neighbor Joining criterion implemented in MEGA 5.1. The GenBank accession numbers of the sequences were listed in Table S5.
Figure 6.
Isoprenoid synthesis pathway in four bacterial species.
The color code represents the enzymes that are present in the species.