Table 1.
Factors and explanatory variables for infectious disease emergence exemplified for human campylobacteriosis.
Figure 1.
Time series data (a) incidence and hospital discharge rates of human campylobacteriosis in Scotland, (b) incidence stratified by age, (c) hospitalisation rates stratified by age, (d) number of chicks placed into UK broiler farms and poultry purchases by household, (e)–(h) age stratified incidence associated with foreign travel, use of proton pump inhibitors and the residual (not explained by the former two factors) and (i) urban/rural ratio of incidence aggregated from Health Boards (1990–2011) and postal sectors (2000–2006) with 95% binomial confidence intervals.
Figure 2.
Host prevalence (a)–(c), genetic distance between human clinical and host genotypes (d)–(f), source attribution by structure (g)–(i) and Simpson's index of diversity (j)–(l) for the three time periods (2001, 2005–07 and 2010–12).
Figure 3.
clonalframe geneaologies for (a) C. jejuni and (b) C. coli for the three study periods.
The abundance (%) of each genotype in each host, for a particular time period, for combined C. jejuni and C. coli, is denoted by length of scale bar. Singleton ST's were removed from the analysis.
Table 2.
Results of the logistic regression for the case-case studies.