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Table 1.

Samples used in the DNA barcoding analysis.

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Table 2.

Genetic divergences within families of Comoran squamates.

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Table 3.

Maximum genetic divergences between and within island populations of Comoran squamates.

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Figure 1.

Bayesian tree of the COI dataset.

Nodes with Bayesian PP and ML bootstrap support ≥ 90% are marked with filled black circles, nodes with Bayesian PP or ML bootstrap support ≥ 90% are marked with empty black circles. Island lineages of endemic species are marked in colors.

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Figure 2.

A comparison of topologies from our DNA barcoding analyses with topologies from multigene analyses for 5 genera of squamates with endemic Comoran lineages.

Nodes with at least two values out of Bayesian PP, ML bootstrap, or Parsimony bootstrap support ≥ 90% are marked with filled black circles, nodes with at least one value out of Bayesian PP, ML bootstrap, or Parsimony bootstrap support ≥ 90% are marked with empty black circles. If only a single support value is available for the phylogeny, black circles filled with grey mark nodes with support values of ≥ 90%, and 'X' mark nodes with support values of ≥ 80%. The topologies were cropped to highlight lineages that are endemic to a single island, marked by color. Lineages that are present in the Comoros, but not endemic, are not highlighted. The multigene topologies are taken from the following studies: Cryptoblepharus [25], Ebenavia (unpublished data by O. Hawlitschek), Lycodryas [31], Paroedura [31], Phelsuma [27].

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Table 4.

Results of the objective clustering analyses of species.

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Table 5.

Results of the objective clustering analyses of island populations.

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