Figure 1.
VirusFinder’s pipeline to detect viruses and their integration sites in next generation sequencing (NGS) data.
VirusFinder overall follows a three-step procedure: (1) preprocessing, (2) virus detection, and (3) virus integration site detection. The current version of VirusFinder (release 1.0) uses UCSC hg19 (http://hgdownload.cse.ucsc.edu/downloads.html#human) as reference human genome. DB: database. SVs: structural variants (especially inter-chromosomal translocations).
Table 1.
Detection of viruses in seven NGS samples using VirusFinder and VirusSeq.
Table 2.
Detection of virus integration sites in five NGS samplesa.
Table 3.
Comparison of computation time of three virus integration-detecting methods on whole genome sequencing (WGS) dataa.