Table 1.
Summary of BAC-anchored microsatellite and SNP markers used for map integration.
Figure 1.
Linkage groups 1 and 2 of common carp are shown as an example.
Annotation of the physical map contig or BAC clone linked to the marker are connected to the marker name (e.g. CAFS3025–ctg51 or CAFS1619–CYC041H06) and brackets around these markers give each contig/clone physical size. Annotation of “kb” means kilo base pairs and “∼141 kb” means approximately equal to 141 kilobase pairs. Red font markers and corresponding annotations represent those markers from the same linkage group linked to the same physical map contig. Distances between markers are shown in cM. All 50 linkage groups of common carp are presented in Figure S1.
Table 2.
Characteristics of the marker distribution among 50 linkage groups of common carp and their integrated physical length.
Table 3.
The BLAST results of HLJ microsatellite loci aligning with the BES database.
Figure 2.
Conserved regions of synteny between the common carp linkage groups and zebrafish chromosome 1.
Conserved syntenic regions were established by genetic linkage mapping of BAC contig-associated microsatellites and SNP markers. Bars on the left side are LG3 and LG16 from common carp and distances between markers are shown in cM. Contig-associated marker names (e.g., CAFS3688) and contig names (e.g., ctg667) are connected by a short thick line, demonstrating the anchor points of the integrated map. The assembled short lines represent the physical map contigs, and each contig and the contig name are marked by different colors. The small black diamond icons on each contig represent the BESs, which are connected to their homologous points on zebrafish chromosome 1 using solid lines.
Table 4.
Duplicated markers on linkage groups of common carp gave evidence of common carp specific whole genome duplication.