Figure 1.
Java programs are represented by blue ellipses, quality control programs are represented in green trapezoids and the blue cylinders connect the programs that provide the final results in different formats.
Table 1.
Number of genes predicted for E. coli K12.
Table 2.
BG7 detection of NCBI E. coli K12 genes.
Figure 2.
BG7 annotation in different states of completion and error rate of E.coli O104:H4 TY-2482 genome.
False positive and false negative genes in BG7 annotation were detected with reference to the genes predicted by BROAD Institute in the annotation available at “Escherichia coli O104:H4 Sequencing Project, Broad Institute of Harvard and MIT (http://www.broadinstitute.org/). The gene sequences were downloaded on 20-Aug-2012 from: http://www.broadinstitute.org/annotation/genome/Ecoli_O104_H4/FeatureSearch.html. We used BLASTN between the nucleotide sequences of the BG7 predicted genes and those from BROAD annotation. The graph displays how the number of BG7 not detected genes (false negatives) is very similar in two very different states of genome assembly with very different error rate in the sequence.