Figure 1.
Homology modelled CaM-like protein.
(a) Cartoon representation of model of CaM-like protein. The N& C terminal is dark blue and dark red respectively (b) Electrostatic molecular surface representation of the model of CaM-like protein.
Figure 2.
CaM-like modelled protein with its ligand IQ1 motif.
(a) Superimposed structures of theoretical 3D model of the CaM-like protein (with C-alpha atoms only) on its respective template in cartoon representation. Template is in blue colour and model is in red colour; (b) CaM-like protein in complex with IQ1 motif. The ligand IQ1 motif is shown as grey stick; (c) Dark violet colour is for the most conserved. The ligand IQ1 motif is shown as grey ribbon.
Table 1.
Template and Target the sequences used for modelling.
Table 2.
Comparison of models with the template.
Table 3.
Conservation score of CaM like Protein model (9-conserved, 1- variable).
Table 4.
Occurrence of EF-hand proteins in more than one Caenorhabditis species.
Figure 3.
The number of Caenorhabditis proteins having 1, 2, 3, 4, 5, 6 or 8 EF-hands.
Figure 4.
Phylogenetic tree to show the overall relatedness of the EF-hand proteins.
All EF-hand proteins were aligned using MAFFT and analyzed using maximum likelihood method in MEGA5. Numbers represent the bootstrap values of 1000 replicates. The expanded groups are shown in Figures 5–11.
Figure 5.
Tree showing all proteins included in this group.
Figure 6.
Tree showing all proteins included in this group.
Figure 7.
Tree showing all proteins included in this group.
Figure 8.
Tree showing all proteins included in this group.
Figure 9.
Tree showing all proteins included in this group.
Figure 10.
Tree showing all proteins included in this group.
Figure 11.
Tree showing all proteins included in this group.