Figure 1.
Samples of A. ilex used in this study.
Numbers are corresponding to those in Table 1 and presented as pie-charts. Slice size proportional to the frequency of the subclades occurring in the site.
Figure 2.
Chronogram of Apodemus based on cyt-b sequences.
Branch lengths represent time; Node bars indicate the 95% CI for the clade age; An asterisk indicates node for calibration; The tx above the nodes refer to median ages and 95% CI for each node in Table 2; Numbers below the nodes are Bayesian posterior probabilities (PP) and ML bootstrap (BS) values. A ‘-’ indicates the value is lower than 0.5 (PP) or 50 (BS).
Figure 3.
Bayesian phylogenetic analysis of A. draco and A. ilex based on cyt-b sequences.
Branch lengths represent substitution per site and numbers at each node represent the Bayesian posterior probabilities and ML bootstrap values. A ‘-’ indicates the value is lower than 0.5 (PP) or 50 (BS).
Table 1.
Divergence information within and between groups of Apodemus.
Table 2.
Results of AMOVA based on different grouping options.
Figure 4.
The median-joining network of A. ilex based on cyt-b sequences.
The circle size is proportional to the haplotype frequency and the branch length is proportional to the number of mutations.
Table 3.
Neutrality test and Mismatch distribution analyses of A. ilex.