Effect of HIV-1 subtype-specific Tat protein polymorphisms on Tat-TAR interaction
Fig 4
The figure shows A) binding energy per frame and B) RMSD of the backbone atoms with respect to the initial structure of the Tat protein from different subtypes. Key: CRF01_AE (black), CRF02_AG (red), A (blue), A1 (cyan), A3 (magenta), A6 (yellow), B (navy), C (wine), and D (pink) in complex with TAR RNA over 200 ns MDS. The figures were generated using OriginPro (OriginLab, Northampton, MA, USA; https://www.originlab.com/).