Puzzle Hi-C: An accurate scaffolding software
Fig 6
The scaffolding results of LACHESIS and Puzzle Hi-C on T. bimaculatus.
a, Synteny between T. bimaculatus and T. rubripes; b, Synteny between Puzzle Hi-C-corrected T. bimaculatus and T. rubripes; c, i T. bimaculatus genome chr1 Hi-C heat map, the black box is the Hi-C heat map suggesting assembly error; ii T. bimaculatus genome chr1 Compartment, red is Compartment A and blue is Compartment B; iii The rearrangement of T. bimaculatus genome chr1 Compartment according to the corrected chr1; iv Puzzle Hi-C corrected chr1 Compartment after Puzzle Hi-C correction; v Puzzle Hi-C corrected chr1 Hi-C heat map.