Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture
Fig 14
Average relative errors of cross-correlating all motifs with length 1 to 4 with first 1260 bp of first 12 chromosomes of Homo sapiens GRCh38.p12 data (sequences are encoded using coding set with d = 3, N = 2, E = 0 and score equal to 0, while each line of SLM cosist of 42 columns).
On the left, a part of the coded reference sequence is shown, while on the right, average relative errors resulted from optical simulation is compared with that of bahaviolral simulationconsidering free boundary of width a) 2 pixels and b) 10 pixels around each nocletide code.