Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals
Fig 5
(a) Junction read quantification per gene (log transformed), estimated using one million reads/sample from five pre-capture and 17 capture samples. Samples chosen for this analysis have above 95% genome completeness. The coverage level per sample is shown below the gene heatmap. Samples in bold denote same sample sequenced as pre-capture and capture. (b) ORF read coverage shown as normalized read counts (RPKM) per gene for 17 capture samples. The boxes represent the first quartile to the third quartile of the normalized read counts for each ORF. The horizontal lines in the boxes represent the median values, and the whiskers represent the variability outside the lower and upper quantiles.