Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals
Fig 2
Ct value vs percent raw sequencing reads mapped to SARS-CoV-2 in (a) Capture enriched samples; (b) Pre-capture samples; (c) Positive and Negative controls. Percentage of reads mapped to the ‘SARS-CoV-2’ genome, to the ‘human’ reference genome and a third category called ‘reads others’, which is the combined total of trimmed reads and reads that do not fall under the two other categories are plotted in this figure. Ct values in bold indicate samples that provided full-length genome assemblies.