Infection of Plasmodiophora brassicae changes the fungal endophyte community of tumourous stem mustard roots as revealed by high-throughput sequencing and culture-dependent methods
Fig 5
LefSe analysis (A) The cladogram diagram shows the taxas with marked differences in the two endophyte communities. Red and green indicate different groups, with the classification of taxas at the level of phylum, class, order, family, and genus shown from inside to the outside. The red and green nodes in the phylogenetic tree represent taxas that play an important role in the two endophyte communities, respectively. Yellow nodes represent taxas with no significant difference. (B) Species with the significant difference that have an LDA score higher than the estimated value; the default score is 3.0. The length of the histogram represents the LDA score; i.e., the degree of influence of taxas with a significant difference between different groups. R, healthy roots. C, clubroots.