MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics
Fig 5
Venn diagrams of called INDEL by four variant callers using (A) BWA (B) Bowtie2 (C) GSNAP with same mapper.
Consistent with SNV results more than 78% INDELS are identified by at least two variant callers.