dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Fig 5
Genomic Visualization of various RNAs identified.
The 1st ring from inside depicts genomic size maker; 2nd ring in black indicates DNA GC content; 3rd ring in purple and green indicates GC skew (+/-); 4th ring in grey indicates housekeeping rRNA and tRNAs; 5th and 6th ring indicates primary TSS (in red) and genes located on the leading strand (black arrows clockwise), 7th ring with oliver arrows indicates the re-annotated genes on the leading strand, including corrected CDS, leaderless mRNAs and proposed operons; 8th and 9th ring indicates primary TSS(in red) and genes (black arrows counterclockwise) located on the lagging strand; 10th ring with Olive green arrows indicates re-annotated genes on the lagging strand; 11th-12th ring show nucleotide conservation patterns with genomes of B. amyloliquefaciens DSM7 (NC_014551.1), B. amyloliquefaciens subsp. plantarum CAU B946 (NC_016784.1) and B. subtilis 168 (NC_000964.3), respectively; 13th ring in orange depicts all the cis-encoded RNAs annotated in this study, including riboswitches and all the antisense RNAs; 14th ring (the most outer-ring in red) depicts experimentally validated sRNAs in this study and their names are labeled.