dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Fig 2
General profile of the sequencing data.
Distribution of the mapped reads of various RNAs from each library varying in different culture conditions or terminator exonuclease treatment. 1CM: 1CM medium; +RE: 1CM medium supplemented with maize root exudates (RE); +SE: 1CM medium supplemented with soil extract (RE); +RS: 1CM medium supplemented with both maize root exudates and soil (RS); TEX: terminator exonuclease; ESP: early stationary phase; MSP: middle stationary phase. (B) Venn diagram showing overlaps among various TSS categories. The TSS were designated into the categories as defined in [12]. (C) Length distribution of 5’leader sequence in B. amyloliquefaciens FZB42. (D) Motif analysis among upstream of TSSs of B. amyloliquefaciens FZB42. Sequences upstream of TSSs were extracted (positions -1 to -50) and common sequence motifs were searched using MEME software. The coordinates give positions relative to TSSs.