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Ligand Pose and Orientational Sampling in Molecular Docking

Figure 9

Hydroxyl dihedral distribution.

A) Distribution of dihedral angles in radians for hydroxyls adjacent to any aromatic six-membered rings in the Cambridge Structural Database[133]. Inset images show a phenol with the dihedral angle marked, B) is an example of off-planar aromatic hydroxyls produced by DOCK3.5.54, DOCK3.6 or in this paper as the “No Reset” option, C) is the Reset Hydroxyl version. The bin from 3.1 to −3.1 is shown only at left.

Figure 9

doi: https://doi.org/10.1371/journal.pone.0075992.g009