Visualization of SNPs with t-SNE
Figure 2
SNP data transformed with PCA and t-SNE 2/2.
On the left is a PCA-plot with the first two components, on the right a t-SNE-plot of the very same data from each data source. Data sources: Panel (a) from hapmap3 r3 (compare with Fig. 1c) and (b) from the Rice Haplotype Map Project (only wild type where the label information was available).