Advantages of a Mechanistic Codon Substitution Model for Evolutionary Analysis of Protein-Coding Sequences
Figure 5
The estimates of branch lengths for the phylogenetic tree of each dataset under the different types of models.
Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The abscissa shows the branch lengths estimated by the best model with the variation of selective constraint, LG-ML91+-12-F-dG4s. The dotted line in each figure shows branch lengths estimated by the best model shown on the abscissa.