Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
Figure 2
Overview of the fragment picking process.
In the first step the program reads in a structure database file and creates the scoring system. During the second, iterative stage, each possible fragment i.e. a local match between a query sequence and a structure from the database is scored and sent to a candidates collector. In the last stage selector object picks the final fragment set based on the candidates gathered by the collector.