Genome Evolution and the Emergence of Fruiting Body Development in Myxococcus xanthus
Figure 3
Neighbor-Joining Tree of the CydA Subunit of the predicted cytochrome bd quinol oxidase.
The tree was generated by identifying the twenty most similar homologs in the non-redundant database at NCBI using the BLASTP algorithm as of Sept. 2006. Proteins were aligned using the Muscle algorithm. Bootstrap values and visualization were generated by the Mega 3.1 program. Tree branches were condensed for those with a bootstrap value >50%. Red filled circles are next to members of the δ Proteobacteria. Anaeromyxobacter1-Anaeromyxobacter dehalogenans 2CP-C YP_464151.1; Anaeromyxobacter2-Anaeromyxobacter dehalogenans 2CP-C YP_466933.1; B_halodurans-Bacillus halodurans C-125; Bacillus_sp-Bacillus sp. NRRL B-14911; Bacillus_subtilis-Bacillus subtilis subsp. subtilis str. 168; Blastopirellula-Blastopirellula marina DSM 3645; C_muridarum-Chlamydia muridarum Nigg; C_trachomatis-Chlamydia trachomatis A/HAR-13; C_trachomatis_D-Chlamydia trachomatis D/UW-3/CX; D_desulfuricans-Desulfovibrio desulfuricans G20; D_gigas-Desulfovibrio gigas; D_vulgaris-Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough; Frankia-Frankia sp. EAN1pec; G_kaustophilus1-Geobacillus kaustophilus HTA426 YP_147937.1; G_kaustophilus2-Geobacillus kaustophilus HTA426 YP_146457.1; G_metallireducens-Geobacter metallireducens GS-15; G_stearothermophilus-Geobacillus stearothermophilus; G_sulfurreducens-Geobacter sulfurreducens PCA; G_uraniumreducens-Geobacter uraniumreducens Rf4; Geobacter_sp.-Geobacter sp. FRC-32; Lawsonia-Lawsonia intracellularis PHE/MN1-00; Myxococcus-Myxococcus xanthus DK 1622; Nocardia-Nocardia farcinica IFM 10152; Oceanobacillus-Oceanobacillus iheyensis HTE831; P_carbinolicus-Pelobacter carbinolicus DSM 2380; P_propionicus-Pelobacter propionicus DSM 2379; S_fumaroxidans1-Syntrophobacter fumaroxidans MPOB ZP_00668206.1; S_fumaroxidans2-Syntrophobacter fumaroxidans MPOB ZP_00668271.1; Solibacter-Solibacter usitatus Ellin6076; Staphylococcus-Staphylococcus epidermidis ATCC 12228; Symbiobacterium-Symbiobacterium thermophilum IAM 14863; Syntrophus-Syntrophus aciditrophicus SB