CLR-Seq: A pipeline to identify bacterial microbiota species with immune-relevant glycan moieties through human C-type lectin receptor interaction

• Jasper Mol,

  Roles Conceptualization, Formal analysis, Investigation, Validation, Methodology, Project administration, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Medical Microbiology and Infection Prevention, Amsterdam Institute for Immunology and Infectious Diseases, Amsterdam UMC, location University of Amsterdam, Amsterdam, The Netherlands

  https://orcid.org/0009-0002-3536-3488

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• Rob van Dalen,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Department of Medical Microbiology and Infection Prevention, Amsterdam Institute for Immunology and Infectious Diseases, Amsterdam UMC, location University of Amsterdam, Amsterdam, The Netherlands

  https://orcid.org/0000-0002-0436-6048

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• Yvonne Pannekoek,

  Roles Supervision, Writing – original draft, Writing – review & editing

  Affiliation Department of Medical Microbiology and Infection Prevention, Amsterdam Institute for Immunology and Infectious Diseases, Amsterdam UMC, location University of Amsterdam, Amsterdam, The Netherlands

  https://orcid.org/0000-0003-1154-652X

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• Malgorzata E. Mnich,

  Roles Resources

  Current Affiliation: Innate Immunity Unit, Institut Pasteur, Université Paris Cité, Inserm U1223, Paris, France

  Affiliation Department of Medical Microbiology, UMC Utrecht, Utrecht, The Netherlands

  https://orcid.org/0009-0007-5064-2350

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• Marcel R. de Zoete,

  Roles Resources, Methodology

  Affiliation Department of Medical Microbiology, UMC Utrecht, Utrecht, The Netherlands

  https://orcid.org/0000-0002-6561-5810

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• Mark Davids,

  Roles Data curation, Formal analysis

  Affiliation Department of Experimental Vascular Medicine, Amsterdam UMC, location University of Amsterdam, Amsterdam, The Netherlands

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• Hilde Herrema,

  Roles Resources

  Affiliation Department of Experimental Vascular Medicine, Amsterdam UMC, location University of Amsterdam, Amsterdam, The Netherlands

  https://orcid.org/0000-0002-0112-6348

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• Nina M. van Sorge

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: n.m.vansorge@amsterdamumc.nl

  Affiliations Department of Medical Microbiology and Infection Prevention, Amsterdam Institute for Immunology and Infectious Diseases, Amsterdam UMC, location University of Amsterdam, Amsterdam, The Netherlands, Netherlands Reference Laboratory for Bacterial Meningitis, Amsterdam UMC, location AMC, Amsterdam, The Netherlands

  https://orcid.org/0000-0002-2695-5863

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