Single-cell transcriptomics of bronchoalveolar lavage reveals divergent macrophage subpopulations and trajectories in interstitial lung disease

• Lai-Ying Zhang ,

  Contributed equally to this work with: Lai-Ying Zhang, Peter C. Allen

  Roles Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: lai-ying.zhang@health.qld.gov.au

  Affiliations Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia, Faculty of Medicine, University of Queensland, Brisbane, Australia

  https://orcid.org/0000-0003-0938-4066

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• Peter C. Allen ,

  Contributed equally to this work with: Lai-Ying Zhang, Peter C. Allen

  Roles Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Translational Genomics Program, Garvan Institute of Medical Research, Sydney, Australia, Faculty of Medicine and Health, University of New South Wales, Sydney, Australia

  https://orcid.org/0000-0002-3950-9539

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• Viviana P. Lutzky,

  Roles Investigation, Methodology, Validation, Writing – review & editing

  Affiliations Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia, Faculty of Medicine, University of Queensland, Brisbane, Australia

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• Simon H. Apte,

  Roles Conceptualization, Investigation, Supervision, Writing – review & editing

  Affiliations Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia, Faculty of Medicine, University of Queensland, Brisbane, Australia

  https://orcid.org/0000-0003-3105-0820

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• Penny L. Groves,

  Roles Methodology, Validation, Writing – review & editing

  Affiliation Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia

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• Maxine E. Tan,

  Roles Methodology, Writing – review & editing

  Affiliation Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia

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• Tharushi De Silva,

  Roles Methodology, Writing – review & editing

  Affiliation Centre of Immunology and Infection Control, Queensland University of Technology, Brisbane, Australia

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• Eleanor R. Spenceley,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations Faculty of Medicine and Health, University of New South Wales, Sydney, Australia, Garvan-Weizmann Centre for Cellular Genomics, Garvan Institute of Medical Research, Sydney, Australia, UNSW Cellular Genomics Futures Institute, University of New South Wales, Sydney, Australia

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• Rachael A. McCloy,

  Roles Investigation, Methodology

  Affiliation Translational Genomics Program, Garvan Institute of Medical Research, Sydney, Australia

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• Quan H. Nguyen,

  Roles Conceptualization, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia

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• Joseph E. Powell,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Translational Genomics Program, Garvan Institute of Medical Research, Sydney, Australia, UNSW Cellular Genomics Futures Institute, University of New South Wales, Sydney, Australia

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• Daniel C. Chambers,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia, Faculty of Medicine, University of Queensland, Brisbane, Australia

  https://orcid.org/0000-0002-9553-5870

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• Brendan J. O’Sullivan

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Supervision, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Queensland Lung Transplant Service, The Prince Charles Hospital, Brisbane, Australia

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