SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

• Kirsten Maren Ellegaard ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: krel@ssi.dk

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0003-1093-1645

  ⨯
• Vithiagaran Gunalan,

  Roles Data curation, Investigation, Software, Validation, Writing – review & editing

  Affiliation Department of Virology and Microbiological Preparedness, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0002-2020-9739

  ⨯
• Raphael Sieber,

  Roles Data curation, Software, Validation, Writing – review & editing

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0002-0372-128X

  ⨯
• Sharmin Jamshid Baig,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0001-7929-2998

  ⨯
• Nicolai Balle Larsen,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department of Virology and Microbiological Preparedness, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0001-5105-7056

  ⨯
• Marc Bennedbæk,

  Roles Data curation, Software, Validation, Writing – review & editing

  Affiliation Department of Virology and Microbiological Preparedness, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0002-2753-5991

  ⨯
• Jonas Bybjerg-Grauholm,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0003-1705-4008

  ⨯
• Leandro Andrés Escobar-Herrera,

  Roles Data curation, Software, Validation, Writing – review & editing

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0002-5671-5609

  ⨯
• Tobias Gress,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department of Virology and Microbiological Preparedness, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0009-0005-5281-211X

  ⨯
• Theis Hass Thorsen,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0009-0006-6920-8231

  ⨯
• Anders Krusager,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department of Virology and Microbiological Preparedness, Statens Serum Institut, Copenhagen, Denmark

  ⨯
• Gitte Nygaard Aasbjerg,

  Roles Data curation, Software, Validation, Writing – review & editing

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0009-0004-5515-9964

  ⨯
• Nour Saad Al-Tamimi,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark

  ⨯
• Casper Westergaard,

  Roles Data curation, Software, Validation, Writing – review & editing

  Affiliation Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0009-0001-5040-2513

  ⨯
• Christina Wiid Svarrer,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Department 318 CMC Bioanalysis, Novo Nordisk, Copenhagen, Denmark

  https://orcid.org/0000-0002-5755-5520

  ⨯
• Morten Rasmussen,

  Roles Writing – review & editing

  Affiliation Department of Virology and Microbiological Preparedness, Statens Serum Institut, Copenhagen, Denmark

  https://orcid.org/0000-0001-7491-4137

  ⨯
•  [ ... ],
• Marc Stegger

  Roles Writing – original draft, Writing – review & editing

  Affiliations Department of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark, Antimicrobial Resistance and Infectious Diseases Laboratory, Harry Butler Institute, Murdoch University, Perth, Australia

  https://orcid.org/0000-0003-0321-1180

  ⨯
• [ view all ]
• [ view less ]