FAVABEAN and FALAPhyl: Open-source pipelines for scalable 16s rRNA microbiome data processing and visualization

• Afnan Faridoun ,

  Roles Conceptualization, Data curation, Formal analysis, Project administration, Validation, Writing – original draft, Writing – review & editing

  * E-mail: afnan.faridoun@ku.edu.kw

  Affiliation Department of General Dental Practice, College of Dentistry, Kuwait University, Kuwait

  https://orcid.org/0000-0001-5282-5088

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• Ramon Carvalho,

  Roles Data curation, Project administration, Validation, Writing – original draft, Writing – review & editing

  Affiliation School of dentistry, Faculty of Medicine and Dentistry, University of Alberta, Alberta

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• Jacob Smith,

  Roles Conceptualization, Data curation, Investigation, Project administration, Writing – original draft, Writing – review & editing

  Affiliation Faculty of Dentistry, Dalhousie University, Halifax, Canada

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• Andrew Gibb,

  Roles Conceptualization, Data curation, Investigation, Writing – original draft, Writing – review & editing

  Affiliation School of dentistry, Faculty of Medicine and Dentistry, University of Alberta, Alberta

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• Lavanya Jain,

  Roles Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

  Affiliation School of dentistry, Faculty of Medicine and Dentistry, University of Alberta, Alberta

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• Annie Zhang,

  Roles Software, Writing – original draft, Writing – review & editing

  Affiliation Department of Translational Research, Dasman Diabetes Institute, Dasman, Kuwait city, Kuwait

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• Ajay Sran,

  Roles Software, Writing – original draft, Writing – review & editing

  Affiliation Department of Translational Research, Dasman Diabetes Institute, Dasman, Kuwait city, Kuwait

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• Johanna Redmond,

  Roles Data curation, Investigation, Writing – original draft, Writing – review & editing

  Affiliation Department of Translational Research, Dasman Diabetes Institute, Dasman, Kuwait city, Kuwait

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• Mohammad Zubbair Malik,

  Roles Methodology, Resources, Software, Writing – original draft, Writing – review & editing

  Affiliation High School Youth Researcher Summer (HYRS) Program, University of Alberta, Alberta

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• Monica Gibson,

  Roles Conceptualization, Data curation, Investigation, Methodology, Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Department of Periodontology, School of Dentistry, Indianapolis, Indiana, United States of America

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• Anum Haider,

  Roles Software, Validation, Writing – original draft, Writing – review & editing

  Affiliation School of dentistry, Faculty of Medicine and Dentistry, University of Alberta, Alberta

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• Umar Rekhi,

  Roles Software, Validation, Writing – original draft, Writing – review & editing

  Affiliation School of dentistry, Faculty of Medicine and Dentistry, University of Alberta, Alberta

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• Anjali Bhagirath,

  Roles Conceptualization, Data curation, Investigation, Project administration, Writing – original draft, Writing – review & editing

  Affiliation Faculty of Dentistry, Dalhousie University, Halifax, Canada

  https://orcid.org/0000-0001-5175-0811

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• Leigha D. Rock,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

  Affiliations Faculty of Dentistry, Dalhousie University, Halifax, Canada, Department of Pathology, Faculty of Medicine, Dalhousie University, Halifax, Canada, Department of Anatomical Pathology, QEII Hospital, Nova Scotia Health, Halifax, Canada

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• Khaled Altabtbaei

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations School of dentistry, Faculty of Medicine and Dentistry, University of Alberta, Alberta, High School Youth Researcher Summer (HYRS) Program, University of Alberta, Alberta

  https://orcid.org/0000-0001-7890-5254

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