Modular and cloud-based bioinformatics pipelines for high-confidence biomarker detection in cancer immunotherapy clinical trials

• Cu Nguyen ,

  Contributed equally to this work with: Cu Nguyen, Trinh Nguyen, Gloria Trivitt

  Roles Data curation, Formal analysis, Software, Validation, Visualization, Writing – review & editing

  Affiliation The Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Trinh Nguyen ,

  Contributed equally to this work with: Cu Nguyen, Trinh Nguyen, Gloria Trivitt

  Roles Data curation, Software, Validation, Visualization, Writing – review & editing

  Affiliation The Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Gloria Trivitt ,

  Contributed equally to this work with: Cu Nguyen, Trinh Nguyen, Gloria Trivitt

  Roles Data curation, Formal analysis, Funding acquisition, Software, Validation, Visualization, Writing – review & editing

  Affiliation The Clinical and Translational Research Informatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Brian Capaldo,

  Roles Data curation, Formal analysis, Methodology, Software, Validation, Writing – review & editing

  Affiliation The Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Chunhua Yan,

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  Affiliation The Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Qingrong Chen,

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  Affiliation The Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Nicholas Renzette ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Methodology, Software, Validation, Visualization, Writing – original draft

  * E-mail: nick.renzette@nih.gov

  Affiliation The Clinical and Translational Research Informatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

  https://orcid.org/0009-0002-1789-9780

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• Umit Topaloglu,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation The Clinical and Translational Research Informatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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• Daoud Meerzaman

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation The Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics and Information Technology, National Cancer Institute, Rockville, Maryland, United States of America

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