Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

• Markus H. K. Johansson ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Validation, Writing – original draft, Writing – review & editing

  * E-mail: markjo@food.dtu.dk

  Affiliation National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

  https://orcid.org/0000-0001-8485-9143

  ⨯
• Thomas N. Petersen,

  Roles Supervision, Writing – review & editing

  Affiliation National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

  ⨯
• Sidsel Nag,

  Roles Data curation

  Affiliation National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

  ⨯
• Timmie M. R. Lagermann,

  Roles Data curation

  Affiliation National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

  ⨯
• Laura E.K. Birkedahl,

  Roles Data curation

  Affiliation National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

  ⨯
• Silva Tafaj,

  Roles Data curation, Writing – review & editing

  Affiliation Microbiology Department, University Hospital “Shefqet Ndroqi”, Tirana, Albania

  https://orcid.org/0000-0003-3777-0095

  ⨯
• Susan Bradbury,

  Roles Data curation

  Affiliation Microbiology Department, Canberra Hospital, Garran, Australian Capital Territory, Australia

  ⨯
• Peter Collignon,

  Roles Data curation

  Affiliation Microbiology Department, Canberra Hospital, Garran, Australian Capital Territory, Australia

  ⨯
• Denise Daley,

  Roles Data curation

  Affiliation Department of Microbiology, PathWest Laboratory Medicine, Fiona Stanley Hospital, Murdoch, Western Australia, Australia

  ⨯
• Victorien Dougnon,

  Roles Data curation

  Affiliation Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, Abomey-Calavi, Cotonou, Benin

  ⨯
• Kafayath Fabiyi,

  Roles Data curation

  Affiliation Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, Abomey-Calavi, Cotonou, Benin

  ⨯
• Boubacar Coulibaly,

  Roles Data curation

  Affiliation Department of Laboratory, Nouna Health Research Centre, Nouna, Burkina Faso

  ⨯
• Réné Dembélé,

  Roles Data curation

  Affiliation Training and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou, Dedougou, Boucle du Mouhon, Burkina Faso

  https://orcid.org/0000-0002-9282-8555

  ⨯
• Natama Magloire,

  Roles Data curation

  Affiliation Clinical Research Unit of Nanoro, National Institutes of Medical Research, Ouagadougou, Burkina Faso

  ⨯
• Isidore J. Ouindgueta,

  Roles Data curation

  Affiliation University of Joseph KI-ZERBO, Ouagadouogou, Burkina Faso

  ⨯
• Zenat Z. Hossain,

  Roles Data curation

  Affiliation Department of Microbiology, University of Dhaka, Dhaka, Bangladesh

  https://orcid.org/0000-0002-6238-0323

  ⨯
• Anowara Begoum,

  Roles Data curation

  Affiliation Department of Microbiology, University of Dhaka, Dhaka, Bangladesh

  ⨯
• Deyan Donchev,

  Roles Data curation

  Affiliation Clinical Laboratory of Microbiology and Virology, University Hospital ”Lozenetz”, Sofia, Bulgaria

  https://orcid.org/0000-0001-7447-7627

  ⨯
• Mathew Diggle,

  Roles Data curation

  Affiliation Alberta Precision Laboratories, Alberta, Canada

  https://orcid.org/0000-0001-5773-0686

  ⨯
• LeeAnn Turnbull,

  Roles Data curation

  Affiliation Alberta Precision Laboratories, Alberta, Canada

  ⨯
• Simon Lévesque,

  Roles Data curation

  Affiliation Service de Microbiologie, Centre Integré Universitaire de Santé et de services sociaux de l’Estrie – Centre Hospitalier Universitaire de Sherbrooke, Sherbrooke, Québec, Canada

  https://orcid.org/0000-0002-4356-9702

  ⨯
• Livia Berlinger,

  Roles Data curation

  Affiliation Bioanalytica AG, Luzern, Switzerland

  ⨯
• Kirstine K. Søgaard,

  Roles Data curation

  Affiliation Division of Clinical Bacteriology and Mycology, University Hospital Basel, Basel, Switzerland

  ⨯
• Paula D. Guevara,

  Roles Data curation

  Affiliation Microbiology Group, Instituto Nacional de Salud, Bogotá, Colombia

  https://orcid.org/0000-0002-8252-5622

  ⨯
• Carolina Duarte,

  Roles Data curation

  Affiliation Microbiology Group, Instituto Nacional de Salud, Bogotá, Colombia

  ⨯
• Panagiota Maikanti,

  Roles Data curation

  Affiliation Charalampous, Microbiology Department, National Reference Laboratory for Antimicrobial Resistance Surveillance, Nicosia General Hospital, Strovolos, Nicosia, Cyprus

  ⨯
• Jana Amlerova,

  Roles Data curation

  Affiliation Department of Microbiology, University Hospital in Plzen, Plzen, Czech Republic

  ⨯
• Pavel Drevinek,

  Roles Data curation

  Affiliation Department of Medical Microbiology, Motol University Hospital, Prague, Czech Republic

  https://orcid.org/0000-0002-8994-5240

  ⨯
• Jan Tkadlec,

  Roles Data curation

  Affiliation Department of Medical Microbiology, Motol University Hospital, Prague, Czech Republic

  ⨯
• Milica Dilas,

  Roles Data curation

  Affiliation Otto-von-Guericke University, Magdebourg, Germany

  ⨯
• Achim Kaasch,

  Roles Data curation

  Affiliation Otto-von-Guericke University, Magdebourg, Germany

  https://orcid.org/0000-0002-6659-6738

  ⨯
• Henrik T. Westh,

  Roles Data curation

  Affiliation Klinisk Mikrobiologisk Afdeling, Hvidovre Hospital, Hvidovre, Denmark

  ⨯
• Mohamed A. Bachtarzi,

  Roles Data curation

  Affiliation Laboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire, Algiers, Algeria

  ⨯
• Wahiba Amhis,

  Roles Data curation

  Affiliation Laboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire, Algiers, Algeria

  ⨯
• Carolina E.S. Salazar,

  Roles Data curation

  Affiliation National Reference Center for Antimicrobial Resistance, National Institute of Public Health research “Dr. Leopoldo Izquieta Pérez”, Quito, Pichicha, Ecuador

  ⨯
• José E. Villacis,

  Roles Data curation

  Affiliation Centro de Investigación para la Salud en América Latina (CISeAL), Pontificia Universidad Católica del Ecuador, Quinto, Pichincha, Ecuador

  ⨯
• Mária A. D. Lúzon,

  Roles Data curation

  Affiliation Department of Pathology and Experimental Therapy, Universitat de Barcelona, Barcelona, Spain

  https://orcid.org/0000-0003-3107-9586

  ⨯
• Dàmaris B. Palau,

  Roles Data curation

  Affiliation Microbiology Department, Hospital de Bellvitge, Barcelona, Spain

  https://orcid.org/0000-0002-3689-3360

  ⨯
• Claire Duployez,

  Roles Data curation

  Affiliation Institute of Microbiology, Centre Hospitalier Universitaire de Lille, Lille, France

  ⨯
• Maxime Paluche,

  Roles Data curation

  Affiliation Bacteriology laboratory, Centre hospitalier de Valenciennes, Valenciennes, France

  https://orcid.org/0000-0003-1976-4660

  ⨯
• Solomon Asante-Sefa,

  Roles Data curation

  Affiliation Sekondi Public Health Laboratory, Ghana Health Service, Effia Nkwanta Regional Hospital, Effia Nkwanta Regional Hospital, Ghana

  https://orcid.org/0000-0002-8383-4910

  ⨯
• Mie Møller,

  Roles Data curation

  Affiliation Dronning Ingrids Hospital, Nuuk, Greenland

  ⨯
• Margaret Ip,

  Roles Data curation

  Affiliation Chinese University of Hong Kong, Shatin, Hong Kong

  https://orcid.org/0000-0003-1291-6537

  ⨯
• Ivana Mareković,

  Roles Data curation

  Affiliation Department of Clinical and Molecular Microbiology, University Hospital Centre Zagreb, Zagreb, Croatia

  ⨯
• Agnes Pál-Sonnevend,

  Roles Data curation

  Affiliation Medical Microbiology and Immunology, University of Pecs Medical School, Pecs, Hungary

  ⨯
• Clementiza E. Cocuzza,

  Roles Data curation

  Affiliation Department of Medicine and Surgery, University of Milano-Bicocca, Milan, Italy

  ⨯
• Asta Dambrauskiene,

  Roles Data curation

  Affiliation Laboratory Medicine Department, Hospital of Lithuanian University of Health Sciences, Kaunas, Lithuania

  ⨯
• Alexandre Macanze,

  Roles Data curation

  Affiliation Centro de Investigação em Saéude de Manhiça, Manhiça, Mozambique

  ⨯
• Anelsio Cossa,

  Roles Data curation

  Affiliation Centro de Investigação em Saéude de Manhiça, Manhiça, Mozambique

  ⨯
• Inácio Mandomando,

  Roles Data curation

  Affiliation Centro de Investigação em Saéude de Manhiça, Manhiça, Mozambique

  ⨯
• Philip Nwajiobi-Princewill,

  Roles Data curation

  Affiliation National Hospital Abuja, Abuja, Nigeria

  ⨯
• Iruka N. Okeke,

  Roles Data curation

  Affiliation Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria

  https://orcid.org/0000-0002-1694-7587

  ⨯
• Aderemi O. Kehinde,

  Roles Data curation

  Affiliations College of Medicine, University of Ibadan, Ibadan, Oyo State, Nigeria, University College of Ibadan, Ibadan, Oyo State, Nigeria

  ⨯
• Ini Adebiyi,

  Roles Data curation

  Affiliations Faculty of Pharmacy, University of Ibadan, Ibadan, Oyo State, Nigeria, University College of Ibadan, Ibadan, Oyo State, Nigeria

  https://orcid.org/0000-0002-6181-0918

  ⨯
• Ifeoluwa Akintayo,

  Roles Data curation

  Affiliation College of Medicine, University of Ibadan, Ibadan, Oyo State, Nigeria

  ⨯
• Oluwafemi Popoola,

  Roles Data curation

  Affiliations College of Medicine, University of Ibadan, Ibadan, Oyo State, Nigeria, University College of Ibadan, Ibadan, Oyo State, Nigeria

  ⨯
• Anthony Onipede,

  Roles Data curation

  Affiliation Obafemi Awolowo University, Ile-Ife, Nigeria

  ⨯
• Anita Blomfeldt,

  Roles Data curation

  Affiliation Department of Microbiology and Infection Control, Akershus University Hospital, Lørenskog, Norway

  ⨯
• Nora E. Nyquist,

  Roles Data curation

  Affiliation Department of Microbiology and Infection Control, Akershus University Hospital, Lørenskog, Norway

  https://orcid.org/0000-0002-5332-5496

  ⨯
• Kiri Bocker,

  Roles Data curation

  Affiliation Southern Community Laboratories, University of Otago, Otago, Dunedin, New Zealand

  ⨯
• James Ussher,

  Roles Data curation

  Affiliation Southern Community Laboratories, University of Otago, Otago, Dunedin, New Zealand

  https://orcid.org/0000-0001-9222-7680

  ⨯
• Amjad Ali,

  Roles Data curation

  Affiliation Department of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (NUST), Islamabad, Pakistan

  ⨯
• Nimat Ullah,

  Roles Data curation

  Affiliation Department of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (NUST), Islamabad, Pakistan

  https://orcid.org/0000-0002-7138-1272

  ⨯
• Habibullah Khan,

  Roles Data curation

  Affiliation Molecular Diagnostic Section, Khyber Teaching Hospital (KTH), Peshawar, Pakistan

  ⨯
• Natalie W. Gustafson,

  Roles Data curation

  Affiliation Departamento de Bacteriologia, Laboratorio Central de Salud Publico, Asunción, Paraguay

  ⨯
• Ikhlas Jarrar,

  Roles Data curation

  Affiliation Basic Medical Sciences Department, Arab American University, Jenin, Palestine

  ⨯
• Arif Al-Hamad,

  Roles Data curation

  Affiliation Division of Clinical Microbiology, Qatif Central Hospital, Al-Qatif, Eastern Province, Saudi Arabia

  ⨯
• Viravarn Luvira,

  Roles Data curation

  Affiliation Department of Clinical Tropical Medicine, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand

  ⨯
• Wantana Paveenkittiporn,

  Roles Data curation

  Affiliation Department of Medical Sciences, National Institute of Health, Sariburi, Thailand

  ⨯
• Irmak Baran,

  Roles Data curation

  Affiliation Medical Microbiology Department, Karadeniz Technical University Farabi Hospital, Trabzon, Ortahisar, Turkey

  https://orcid.org/0000-0001-6729-948X

  ⨯
• James C. L. Mwansa,

  Roles Data curation

  Affiliation Lusaka Apex Medical School, Lusaka, Zambia

  ⨯
• Linda Sikakwa,

  Roles Data curation

  Affiliation Levy Mwanawasa Teaching Hospital, Lusaka, Zambia

  ⨯
• Kaunda Yamba,

  Roles Data curation

  Affiliation University Teaching Hospital, Lusaka, Zambia

  ⨯
•  [ ... ],
• Frank M. Aarestrup

  Roles Funding acquisition, Supervision, Writing – review & editing

  Affiliation National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

  ⨯
• [ view all ]
• [ view less ]